Swiss-PdbViewer: Superimposition

Index User Guide Tips & Tricks Tutorial Feedback Art Gallery home Last modified 31 March 98 by N.Guex | # References As several people have asked me how they should cite Swiss-PdbViewer, I have included references. You must at least use the third one. The first one is a published abstract, the second one comes from the PDB newsletter. The third one is description of the homology modelling capabilities of Swiss-PdbViewer used in conjunction to the SWISS-MODEL server.It also gives a detailed example of what accuracy level you can expect from a model, and should be very instructive to people not familiar with protein modelling. Guex, N.(1996) Swiss-PdbViewer: A new fast and easy to use PDB viewer for the Macintosh. Experientia 52, pp. A26. Guex, N and Peitsch, M.C.(1996) Swiss-PdbViewer: A Fast and Easy-to-use PDB Viewer for Macintosh and PC. Protein Data Bank Quaterly Newsletter 77, pp. 7. Guex, N. and Peitsch, M.C. (1997) SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modeling. Electrophoresis 18, 2714-2723. If you can also include somewhere the official url, it would be nice. http://www.expasy.ch/spdbv/mainpage.htm Articles cited in user guide (in construction) Weiner, S.J., Kollman, P.A., Case, D.A., Singh, U.C., Ghio, C., Alagona, G., Profeta, S.,Weiner, P.K.(1984) A new force field for molecular mechanical simulation of nucleic acids proteins. J. Am. Chem. Soc. 106,765-784. Morris, A.L., MacArthur, M.W., Hutchinson, E.G., Thornton, J.M.(1992) Stereochemical Quality of Protein Structure Coordinates. PROTEINS: Structure, Function, and Genetics 12,345-364. Carson, M. (1987) Ribbon model of macromolecules. J. mol. Graphics. 5,103-106. Vriend G. (1987,1993,1997) whatcheck (html), whatcheck (ftp), whatcheck (ftp). Huang, X., Miller, M. (1991) A Time-Efficient, Linear-Space Local Similarity Algorithm Adv. Appl. Math. 12,337-357. Sippl, J.M. (1990) Calculation of Conformational Ensembles from Potentials of Mean Force: an approach to the knowledge based prediction of local structures in globular proteins. J. Mol. Biol. 213,859-883.